.. _home-page-index:

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Welcome to the documentation of Master Of Pores 4
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.. autosummary::
   :toctree: generated

.. image:: ../img/ssj4.png
  :width: 600

Master of Pores is a pipeline written in Nextflow DSL2 for the analysis of Nanopore data. It can handle reads from direct RNAseq, cDNAseq, DNAseq etc.

The package is currently composed of one pipeline, more will be soon released:

- mop_preprocess: preprocessing of raw data

.. MoP4 documentation master file, created by
   Luca Cozzuto.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Contents:

.. toctree::
   :maxdepth: 1

   about
   install
   mop_preprocess
   mop_utils
   reporting
   awsbatch
   changelog
   ci
   troubleshooting
   tutorial