Nextflow 5

Running nextflow on the CRG HPC

For running on the CRG HPC you can use the executor SGE

The HPC has several tools already installed that can be “loaded” as modules, for instance you might want to load singularity version 3.7.0 for being used with your pipelines.

For doing so you can add this string of code to your .bashrc, that is a file that is run every time you log to a remote computer in the HPC or you submit a job:

vim $HOME/.bashrc

Then add this at the end

#EasyBuild
module use /software/as/el7.2/EasyBuild/CRG/modules/all
module load Singularity/3.7.0