PhD Course 2022
Linux commands and Genomics data formats for biologists
Instructors
| Luca Cozzuto | Toni Hermoso | Julia Ponomarenko |
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from the CRG Bioinformatics core facility (office 425, 4th floor of the hospital side)
Materials for the course are available at this website.
Learning objectives
- Understand common genomics data formats: FASTA, FASTQ, GTF, BED, SAM/BAM.
- Learn how to create the folder structure for the computational project and navigate it.
- Learn how to explore, parse and manipulate data files using common Linux commands wget, ls, man, more, wc, zcat, cat, head, tail, grep, cut, sort, uniq, tr.
Prerequisites
- The CRG course “Intro to basic Linux commands”.