NanoPreprocess results

a) Spliced mapping

If you click on any sample below it will bring you to the processed data produced by NanoPreprocess module from MasterOfPores (base-called FAST5, FASTQ, per-gene counts, mapped BAMs, MultiQC report)

Parameters used for spliced NanoPreprocessing step can be found HERE.

Sample	Sequencing type	Reference	Raw Reads	Basecalled Reads	Mapped reads	Mapped reads (%)	Identity (%)
PRJEB3379_WT	dRNA	Coronavirus 229E	428,120	428,120	82,197	19.19	90.47
PRJEB3379_SL2	dRNA	Coronavirus 229E	310,957	310,957	69232	22.26	89.85
PRJNA608224_Australia_Infected	dRNA	Coronavirus Wuhan-Hu-1	680,347	680,347	199,283	29.29	90.02
[PRJNA608224_Australia_Infected]	dRNA	Green Monkey (ChlSab1.1)	680347	680347	-	-	-
PRJNA608224_Virions_Australia	dRNA	Coronavirus Wuhan-Hu-1	430,923	430,923	18,582	4.31	87.63
[8F6N9_Korea_VeroControl]	dRNA	Green Monkey (ChlSab1.1)	1,439,300	1,439,300	-	-	-
8F6N9_Korea_VeroInfected	dRNA	Coronavirus Wuhan-Hu-1	879,700	879,700	575,154	65.38	89.71

b ) Unspliced mapping

If you click on any sample below it will bring you to the processed data produced by NanoPreprocess module from MasterOfPores (base-called FAST5, FASTQ, per-gene counts, mapped BAMs, MultiQC report)

Sample	Sequencing type	Reference	Raw Reads	Basecalled Reads	Mapped reads	Mapped reads (%)	Identity (%)
PRJEB3379_WT	dRNA	Coronavirus 229E	428,120	428,120	82,747	19.32	90.56
PRJEB3379_SL2	dRNA	Coronavirus 229E	310,957	310,957	69,332	22.29	89.97
PRJNA608224_Australia_Infected	dRNA	Coronavirus Wuhan-Hu-1	680,347	680,347	199,920	29.38	90.47
8F6N9_Korea_IVT	dRNA	Coronavirus Wuhan-Hu-1	3,460,914	3,460,914	3,187,061	92.08	89
8F6N9_Korea_VeroInfected	dRNA	Coronavirus Wuhan-Hu-1	879,700	879,700	575,090	65.37	90.12