Benchmark

We tested MoP on two minION runs using the CRG’s HPC where we can run up to 100 jobs in parallel (maximum 8 CPUs each) and using up to 10 GPU cards (GeForce RTX 2080 Ti). The test dataset was published at ENA with the accession ERR5296640 for pU samples and ERR5303454 for Nm samples.

Dataset

	MOP_PREPROCESS	MOP_MOD	MOP_TAIL	MOP_CONSENSUS
Input data	95 Gb	137 Gb	137 Gb	14 Mb
Execution time	10 hours	6 hours	2.5 hours	3 mins
Work folder	382 Gb	595 Gb	3 Gb	25 Mb
Output folder	137 Gb	14 Mb	76 Mb	13 Mb